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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ATAC-seq
14
ChIP-seq
Assay category
31
DNA accessibility
14
DNA binding
Target of assay
11
transcription factor
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
20
May, 2022
16
August, 2021
5
May, 2021
3
February, 2023
1
October, 2017
Available data
120
bed narrowPeak
66
txt
64
xls
45
bigWig
26
fastq
25
bam
10
tsv
3
bed bedgraph
3
hic
2
bed bed3+
2
bed broadPeak
2
bedpe bed3+
1
bedpe
1
vcf
Organism
45
Homo sapiens
Biosample type
primary cell
21
tissue
14
cell line
10
in vitro differentiated cells
Organ
34
liver
2
connective tissue
1
pancreas
Project
45
AMP
Genome assembly (visualization)
45
hg19
1
GRCh38
Lab
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
biosample_type!
primary cell
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
45 results
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ATAC-seq
ChIP-seq
tissue
liver
20
islet of Langerhans
1
cell line
HepG2
14
in vitro differentiated cells
embryonic stem cell
6
Progenitor cell of Hypothalamus (neural progenitor cell)
1
adipocyte
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
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