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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
total RNA-seq
7
ChIP-seq
3
DNase-seq
Assay category
57
Transcription
7
DNA binding
3
DNA accessibility
Target of assay
5
transcription factor
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
Date released
56
February, 2021
6
June, 2019
4
July, 2019
1
May, 2021
Available data
79
bam
67
bigWig
57
tsv
18
bed narrowPeak
6
bigBed narrowPeak
6
tagAlign
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
67
Homo sapiens
Biosample type
tissue
56
cell line
10
primary cell
1
in vitro differentiated cells
Organ
357
liver
301
epithelium
250
pancreas
89
connective tissue
85
vasculature
80
blood vessel
67
heart
58
artery
55
blood
55
bodily fluid
40
kidney
29
embryo
20
brain
15
vein
11
musculature of body
eye
2
adipose tissue
1
pericardium
Project
67
AMP
Genome assembly (visualization)
67
GRCh38
66
hg19
Lab
67
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
biosample_type!
tissue
organ_slims!
eye
BIOSAMPLE
ASSAY
67 results
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total RNA-seq
ChIP-seq
DNase-seq
cell line
smooth muscle cell of the coronary artery
52
4
primary cell
cardiac fibroblast
3
3
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
in vitro differentiated cells
cardiac fibroblast
1
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