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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
353
ChIP-seq
104
total RNA-seq
3
ATAC-seq
1
DNase-seq
1
Hi-C
1
WGBS
Assay category
353
DNA binding
104
Transcription
4
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
312
transcription factor
88
recombinant protein
59
RNA binding protein
26
chromatin remodeller
23
histone
23
histone modification
13
control
13
narrow histone mark
10
broad histone mark
1
other context
1
other post-translational modification
Date released
210
November, 2017
83
February, 2021
57
November, 2018
27
December, 2018
22
August, 2021
20
January, 2019
19
October, 2019
12
November, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
582
bam
522
bigWig
427
fastq
404
bed narrowPeak
355
bigBed narrowPeak
119
tsv
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
463
Homo sapiens
Biosample type
1520
tissue
564
primary cell
463
cell line
258
in vitro differentiated cells
3
stem cell
Organ
274
liver
56
artery
56
blood vessel
56
heart
56
vasculature
55
blood
55
bodily fluid
55
pancreas
50
epithelium
12
kidney
8
embryo
Project
459
AMP
4
T1D
Genome assembly (visualization)
458
hg19
409
GRCh38
Lab
449
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
58
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
463 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
268
5
1
smooth muscle cell of the coronary artery
4
52
GM12878
54
1
EndoC_BH1
13
33
2
H1-hESC
8
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