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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
total RNA-seq
58
ChIP-seq
3
ATAC-seq
1
Hi-C
1
WGBS
Assay category
104
Transcription
58
DNA binding
3
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
28
transcription factor
17
histone
17
histone modification
13
control
9
narrow histone mark
8
broad histone mark
7
recombinant protein
2
RNA binding protein
Date released
83
February, 2021
22
August, 2021
19
November, 2017
12
November, 2019
12
October, 2019
7
March, 2020
5
January, 2019
5
May, 2021
1
January, 2018
1
November, 2018
Available data
582
bam
522
bigWig
427
fastq
404
bed narrowPeak
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
167
Homo sapiens
Biosample type
1172
tissue
504
primary cell
242
in vitro differentiated cells
167
cell line
3
stem cell
Organ
56
artery
56
blood vessel
56
heart
56
vasculature
49
epithelium
49
pancreas
39
liver
11
kidney
8
embryo
1
blood
1
bodily fluid
Project
163
AMP
4
T1D
Genome assembly (visualization)
166
hg19
131
GRCh38
Lab
153
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
58
inconsistent ontology term
Audit category:
2
inconsistent control read length
1
inconsistent assembly
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
167 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
WGBS
cell line
smooth muscle cell of the coronary artery
52
4
EndoC_BH1
33
13
2
HepG2
5
33
1
H1-hESC
8
RCC 7860 HIF1a re-expression
1
3
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