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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
104
total RNA-seq
3
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
104
Transcription
5
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Date released
78
February, 2021
8
August, 2021
7
October, 2019
6
March, 2020
5
January, 2019
4
May, 2021
1
January, 2018
1
November, 2018
1
November, 2019
Available data
119
tsv
117
bam
111
bigWig
12
bed narrowPeak
7
fastq
3
bed bed3+
2
bedpe bed3+
2
bigBed narrowPeak
2
hic
1
bed bed3
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
hdf5
1
txt
1
vcf
Organism
111
Homo sapiens
Biosample type
1157
tissue
366
primary cell
144
in vitro differentiated cells
111
cell line
1
stem cell
Organ
52
artery
52
blood vessel
52
heart
52
vasculature
37
epithelium
37
pancreas
8
embryo
6
liver
5
kidney
1
blood
1
bodily fluid
Project
109
AMP
2
T1D
Genome assembly (visualization)
110
hg19
108
GRCh38
Lab
111
AMP-T2D consortium
Audit category:
38
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
111 results
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total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
2
H1-hESC
8
HepG2
5
1
Panc1
1
1
early embryonic cell
2
glomerular visceral epithelial cell
1
1
GM12878
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
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