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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
410
ChIP-seq
100
total RNA-seq
2
DNase-seq
1
ATAC-seq
1
Hi-C
1
WGBS
Assay category
410
DNA binding
100
Transcription
3
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
356
transcription factor
88
recombinant protein
63
RNA binding protein
36
histone
36
histone modification
30
chromatin remodeller
18
broad histone mark
18
narrow histone mark
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
83
February, 2021
57
November, 2018
27
December, 2018
22
August, 2021
20
January, 2019
20
October, 2019
12
November, 2019
March, 2020
5
May, 2021
1
January, 2018
Available data
577
bam
515
bigWig
427
fastq
403
bed narrowPeak
355
bigBed narrowPeak
110
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
515
Homo sapiens
Biosample type
1721
tissue
613
primary cell
515
cell line
257
in vitro differentiated cells
3
stem cell
Organ
332
liver
56
artery
56
blood vessel
56
heart
56
vasculature
55
blood
55
bodily fluid
51
pancreas
45
epithelium
12
kidney
8
embryo
Project
514
AMP
1
T1D
Genome assembly (visualization)
510
hg19
449
GRCh38
Lab
501
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
53
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
month_released!
March, 2020
BIOSAMPLE
ASSAY
515 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
cell line
HepG2
326
5
1
smooth muscle cell of the coronary artery
4
52
GM12878
54
1
EndoC_BH1
12
31
H1-hESC
8
Panc1
6
1
1
RCC 7860 HIF1a re-expression
3
1
RCC 7860 HIF2a over-expression
2
1
RCC 7860 vector
2
1
glomerular visceral epithelial cell
1
1
iPSC derived cell line
1
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