Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1053
total RNA-seq
822
ChIP-seq
206
DNase-seq
121
ATAC-seq
100
single cell RNA-seq
18
small RNA-seq
16
WGBS
5
FAIRE-seq
4
Hi-C
Assay category
1171
Transcription
822
DNA binding
332
DNA accessibility
16
DNA methylation
4
3D chromatin structure
Target of assay
717
histone modification
716
histone
365
narrow histone mark
351
broad histone mark
98
transcription factor
32
RNA binding protein
10
control
3
chromatin remodeller
3
other context
3
other post-translational modification
Date released
446
February, 2021
260
May, 2020
224
August, 2017
210
June, 2019
209
May, 2021
183
October, 2019
164
July, 2018
97
May, 2019
85
July, 2019
72
September, 2018
66
November, 2017
65
April, 2019
49
April, 2018
47
October, 2018
36
December, 2017
23
November, 2018
20
May, 2022
19
November, 2019
14
October, 2017
11
March, 2020
7
August, 2020
6
January, 2019
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
August, 2021
3
December, 2018
3
June, 2018
3
September, 2020
2
January, 2018
Available data
2516
bam
2345
bigWig
1346
tsv
1239
bed narrowPeak
786
fastq
670
bigBed narrowPeak
338
tagAlign
262
bed broadPeak
242
bed bed3+
225
bigBed broadPeak
157
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
17
hic
14
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
Organism
2339
Homo sapiens
Biosample type
1732
tissue
613
primary cell
522
cell line
259
in vitro differentiated cells
3
stem cell
Organ
565
pancreas
513
connective tissue
425
adipose tissue
276
liver
231
epithelium
222
brain
127
heart
119
kidney
99
vasculature
94
blood vessel
91
limb
68
musculature of body
58
bone element
31
nerve
29
artery
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
2153
AMP
182
T1D
10
HPAP
Genome assembly (visualization)
2243
hg19
2191
GRCh38
Lab
2099
AMP-T2D consortium
215
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Klaus Kaestner, Upenn
1
Stephen Parker, UMich
Audit category:
41
inconsistent ontology term
27
inconsistent control
Audit category:
69
missing controlled_by
Audit category:
11
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
2345 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
FAIRE-seq
Hi-C
tissue
adipose tissue
381
1
2
2
islet of Langerhans
266
29
1
3
1
liver
147
82
2
20
1
bone tissue
58
body of pancreas
2
26
4
4
2
2
+ See 132 more…
primary cell
monocyte
53
84
2
pancreatic alpha cell
10
7
13
12
CD8-positive, alpha-beta T cell
4
33
2
pancreatic beta cell
10
7
10
12
pancreatic ductal cell
4
13
4
10
+ See 73 more…
See all biosamples
Download