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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
244
ChIP-seq
150
total RNA-seq
100
single cell RNA-seq
78
ATAC-seq
2
DNase-seq
2
small RNA-seq
1
FAIRE-seq
Assay category
252
Transcription
244
DNA binding
81
DNA accessibility
Target of assay
227
histone
227
histone modification
117
broad histone mark
110
narrow histone mark
10
RNA binding protein
10
control
10
transcription factor
1
chromatin remodeller
Date released
169
May, 2021
90
May, 2020
72
September, 2018
48
July, 2018
46
August, 2017
43
April, 2018
23
June, 2019
21
October, 2019
18
July, 2019
9
November, 2017
7
August, 2020
5
December, 2019
5
September, 2017
4
May, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
September, 2020
2
February, 2021
2
October, 2018
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
577
Homo sapiens
Biosample type
1531
tissue
577
primary cell
520
cell line
245
in vitro differentiated cells
1
stem cell
Organ
210
epithelium
192
pancreas
25
connective tissue
21
vasculature
18
blood vessel
18
kidney
13
vein
12
brain
10
musculature of body
7
heart
5
liver
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
387
AMP
180
T1D
10
HPAP
Genome assembly (visualization)
567
hg19
489
GRCh38
Lab
354
AMP-T2D consortium
213
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
Audit category:
35
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
577 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
FAIRE-seq
primary cell
monocyte
84
53
2
pancreatic alpha cell
7
10
12
13
pancreatic beta cell
7
10
12
10
CD8-positive, alpha-beta T cell
33
2
2
pancreatic ductal cell
13
4
10
4
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