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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
575
ChIP-seq
177
DNase-seq
43
ATAC-seq
16
WGBS
16
small RNA-seq
4
FAIRE-seq
Assay category
575
DNA binding
224
DNA accessibility
16
DNA methylation
16
Transcription
Target of assay
487
histone modification
486
histone
253
narrow histone mark
233
broad histone mark
88
transcription factor
22
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
June, 2019
152
October, 2019
93
May, 2019
89
August, 2017
65
April, 2019
57
November, 2017
45
October, 2018
36
December, 2017
32
July, 2019
27
May, 2020
23
November, 2018
20
May, 2022
14
October, 2017
6
January, 2019
4
March, 2020
3
December, 2018
2
January, 2018
Available data
1000
bam
944
bed narrowPeak
831
bigWig
561
bigBed narrowPeak
274
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
145
tsv
98
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
825
Homo sapiens
Biosample type
831
tissue
461
primary cell
418
cell line
132
in vitro differentiated cells
3
stem cell
Organ
197
brain
116
liver
105
heart
104
pancreas
90
kidney
87
limb
66
blood vessel
66
vasculature
54
musculature of body
29
adipose tissue
29
connective tissue
27
artery
27
nerve
18
ureter
16
spleen
3
eye
1
pituitary gland
Project
829
AMP
2
T1D
Genome assembly (visualization)
771
GRCh38
746
hg19
Lab
810
AMP-T2D consortium
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
831 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
FAIRE-seq
tissue
liver
82
2
20
1
body of pancreas
26
4
4
2
2
heart left ventricle
29
3
2
2
islet of Langerhans
29
1
3
1
kidney
20
13
1
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