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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
575
ChIP-seq
177
DNase-seq
43
ATAC-seq
16
WGBS
16
small RNA-seq
9
RRBS
4
FAIRE-seq
Assay category
917
Transcription
575
DNA binding
224
DNA accessibility
25
DNA methylation
Target of assay
487
histone modification
486
histone
253
narrow histone mark
233
broad histone mark
88
transcription factor
22
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
181
August, 2017
170
May, 2020
163
June, 2019
160
October, 2019
116
July, 2018
93
May, 2019
69
July, 2019
65
April, 2019
57
November, 2017
45
October, 2018
38
May, 2021
36
December, 2017
23
November, 2018
20
May, 2022
19
November, 2019
14
October, 2017
11
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
January, 2018
Available data
1907
bam
1732
bigWig
1076
tsv
944
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1735
Homo sapiens
Biosample type
1741
tissue
623
primary cell
522
cell line
259
in vitro differentiated cells
3
stem cell
Organ
481
connective tissue
423
adipose tissue
375
pancreas
266
liver
203
brain
118
heart
92
kidney
91
limb
70
blood vessel
70
vasculature
59
musculature of body
58
bone element
31
nerve
27
artery
18
ureter
16
spleen
3
eye
1
pericardium
1
pituitary gland
Project
1739
AMP
2
T1D
Genome assembly (visualization)
1672
GRCh38
1656
hg19
Lab
1720
AMP-T2D consortium
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
1741 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
RRBS
FAIRE-seq
tissue
adipose tissue
381
1
2
2
islet of Langerhans
266
29
1
3
1
1
liver
147
82
2
20
1
1
bone tissue
58
body of pancreas
2
26
4
4
2
2
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