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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
898
total RNA-seq
556
ChIP-seq
145
DNase-seq
42
ATAC-seq
15
WGBS
15
small RNA-seq
4
FAIRE-seq
Assay category
913
Transcription
556
DNA binding
191
DNA accessibility
15
DNA methylation
Target of assay
468
histone modification
467
histone
246
narrow histone mark
221
broad histone mark
88
transcription factor
22
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
170
May, 2020
165
August, 2017
160
October, 2019
131
June, 2019
116
July, 2018
87
May, 2019
65
April, 2019
60
July, 2019
57
November, 2017
45
October, 2018
38
May, 2021
36
December, 2017
23
November, 2018
20
May, 2022
19
November, 2019
14
October, 2017
9
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
1
January, 2018
Available data
1863
bam
1675
bigWig
1069
tsv
893
bed narrowPeak
523
bigBed narrowPeak
375
fastq
223
tagAlign
172
bed bed3+
168
bed broadPeak
156
txt
144
bigBed broadPeak
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1669
Homo sapiens
Biosample type
1675
tissue
602
primary cell
522
cell line
259
in vitro differentiated cells
3
stem cell
Organ
481
connective tissue
423
adipose tissue
373
pancreas
265
liver
202
brain
117
heart
91
kidney
91
limb
70
blood vessel
70
vasculature
58
bone element
musculature of body
31
nerve
27
artery
18
ureter
16
spleen
3
eye
1
pituitary gland
Project
1673
AMP
2
T1D
Genome assembly (visualization)
1630
GRCh38
1591
hg19
Lab
1654
AMP-T2D consortium
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
1675 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
FAIRE-seq
tissue
adipose tissue
381
1
2
2
islet of Langerhans
266
29
1
3
1
liver
147
82
2
20
1
bone tissue
58
body of pancreas
2
26
4
4
2
2
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