Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
269
total RNA-seq
82
ChIP-seq
7
ATAC-seq
7
DNase-seq
4
WGBS
2
FAIRE-seq
2
small RNA-seq
Assay category
271
Transcription
82
DNA binding
16
DNA accessibility
4
DNA methylation
Target of assay
65
histone
65
histone modification
37
broad histone mark
28
narrow histone mark
17
transcription factor
8
RNA binding protein
Date released
130
August, 2017
116
July, 2018
40
October, 2018
36
May, 2021
19
November, 2019
7
November, 2018
6
April, 2018
5
March, 2020
5
October, 2017
4
July, 2019
4
June, 2019
1
May, 2019
Available data
429
bam
373
bigWig
275
tsv
213
fastq
123
bed narrowPeak
62
bigBed narrowPeak
27
bed bed3+
20
bed broadPeak
16
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
bigBed broadPeak
6
txt
3
bedpe bed3+
3
hic
1
bedpe
Organism
367
Homo sapiens
Biosample type
373
tissue
192
primary cell
56
cell line
2
in vitro differentiated cells
Organ
481
connective tissue
423
adipose tissue
373
pancreas
265
liver
202
brain
117
heart
91
kidney
91
limb
70
blood vessel
70
vasculature
58
bone element
57
musculature of body
31
nerve
27
artery
18
ureter
16
spleen
3
eye
1
pituitary gland
Project
371
AMP
2
T1D
Genome assembly (visualization)
367
hg19
363
GRCh38
Lab
372
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
373 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
small RNA-seq
tissue
islet of Langerhans
266
29
3
1
1
body of pancreas
2
26
4
4
2
2
pancreas
1
13
2
2
1
endocrine pancreas
14
Download