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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
ATAC-seq
5
DNase-seq
5
FAIRE-seq
Assay category
1400
Transcription
1306
DNA binding
146
DNA accessibility
17
DNA methylation
Date released
45
May, 2020
20
May, 2022
14
September, 2018
10
August, 2017
8
July, 2019
8
October, 2017
7
August, 2020
7
October, 2019
5
May, 2021
5
September, 2017
4
March, 2020
3
February, 2023
3
January, 2018
3
September, 2020
2
August, 2021
1
February, 2021
1
November, 2018
Available data
492
bed narrowPeak
389
bam
350
bigWig
241
bigBed narrowPeak
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
102
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
146
Homo sapiens
Biosample type
81
primary cell
48
tissue
13
in vitro differentiated cells
4
cell line
Organ
44
pancreas
36
epithelium
21
liver
10
connective tissue
4
adipose tissue
4
blood vessel
4
heart
4
vasculature
3
brain
2
artery
2
kidney
2
limb
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
spleen
1
vein
Project
136
AMP
10
HPAP
Genome assembly (visualization)
134
hg19
54
GRCh38
Lab
105
AMP-T2D consortium
20
Karen Mohlke, UNC
10
Klaus Kaestner, Upenn
5
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
1
Stephen Parker, UMich
Audit category:
7
inconsistent ontology term
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
146 results
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ATAC-seq
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
pancreatic ductal cell
4
B cell
2
+ See 27 more…
tissue
liver
20
islet of Langerhans
3
1
1
body of pancreas
4
adipose tissue
2
heart left ventricle
2
+ See 15 more…
in vitro differentiated cells
embryonic stem cell
6
adipocyte
3
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
cell line
EndoC_BH1
2
GM12878
1
glomerular visceral epithelial cell
1
See all biosamples
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