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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
374
ChIP-seq
159
total RNA-seq
21
ATAC-seq
3
small RNA-seq
1
Hi-C
1
WGBS
Assay category
374
DNA binding
162
Transcription
21
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
289
transcription factor
81
recombinant protein
69
histone modification
68
histone
52
RNA binding protein
46
narrow histone mark
22
broad histone mark
19
chromatin remodeller
13
control
1
other context
1
other post-translational modification
Date released
210
November, 2017
170
May, 2020
50
December, 2017
49
November, 2018
20
May, 2022
18
August, 2017
17
August, 2021
8
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
1
March, 2020
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
559
Homo sapiens
Biosample type
274
cell line
262
tissue
14
in vitro differentiated cells
9
primary cell
Organ
603
pancreas
560
connective tissue
559
liver
422
adipose tissue
279
epithelium
175
brain
154
heart
138
vasculature
137
blood vessel
81
artery
58
bone element
55
blood
55
bodily fluid
55
limb
53
kidney
29
embryo
29
nerve
22
musculature of body
15
spleen
11
vein
2
eye
1
pericardium
1
pituitary gland
Project
559
AMP
Genome assembly (visualization)
554
hg19
479
GRCh38
Lab
525
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
14
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
559 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
WGBS
cell line
HepG2
268
5
1
tissue
liver
82
147
20
1
right lobe of liver
7
2
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
endothelial cell of hepatic sinusoid
1
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