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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1284
total RNA-seq
100
single cell RNA-seq
74
ATAC-seq
66
ChIP-seq
18
small RNA-seq
17
WGBS
5
GRO-seq
5
Hi-C
Assay category
66
DNA binding
Target of assay
27
transcription factor
20
control
19
histone
19
histone modification
11
narrow histone mark
8
broad histone mark
1
RNA binding protein
Date released
39
August, 2017
22
November, 2017
3
May, 2021
2
October, 2019
Available data
1578
bam
1350
bigWig
bed narrowPeak
857
fastq
801
bigBed narrowPeak
398
tagAlign
114
bed broadPeak
79
bigBed broadPeak
53
bed bed3+
3
tar
1
tagAlign bed3+
Organism
66
Homo sapiens
Biosample type
21
primary cell
21
tissue
19
cell line
5
in vitro differentiated cells
Organ
21
pancreas
19
liver
17
connective tissue
12
adipose tissue
4
epithelium
4
vasculature
3
blood vessel
3
brain
2
vein
Project
66
AMP
Genome assembly (visualization)
66
hg19
38
GRCh38
Lab
63
AMP-T2D consortium
3
Kyle Gaulton, UCSD
Audit category:
38
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
66 results
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ChIP-seq
primary cell
pancreatic endocrine cell
12
CD8-positive, alpha-beta T cell
3
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
+ See 2 more…
tissue
white adipose tissue
12
islet of Langerhans
9
cell line
HepG2
19
in vitro differentiated cells
adipocyte
5
See all biosamples
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