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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
394
ChIP-seq
104
total RNA-seq
3
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
394
DNA binding
104
Transcription
5
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
351
transcription factor
88
recombinant protein
63
RNA binding protein
30
chromatin remodeller
26
histone
26
histone modification
14
narrow histone mark
12
broad histone mark
12
control
2
other context
2
other post-translational modification
Date released
256
November, 2017
78
February, 2021
57
November, 2018
27
December, 2018
22
August, 2021
20
January, 2019
20
October, 2019
12
November, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
582
bam
522
bigWig
427
fastq
404
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
505
Homo sapiens
Biosample type
1588
tissue
514
primary cell
505
cell line
241
in vitro differentiated cells
3
stem cell
Organ
320
liver
56
pancreas
55
blood
55
bodily fluid
52
artery
52
blood vessel
52
heart
52
vasculature
50
epithelium
12
kidney
8
embryo
Project
501
AMP
4
T1D
Genome assembly (visualization)
500
hg19
440
GRCh38
Lab
491
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
58
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
505 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
314
5
1
GM12878
54
1
smooth muscle cell of the coronary artery
52
EndoC_BH1
13
33
2
H1-hESC
8
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