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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
ChIP-seq
98
total RNA-seq
38
ATAC-seq
Assay category
104
DNA binding
98
Transcription
38
DNA accessibility
Target of assay
152
histone
152
histone modification
85
broad histone mark
narrow histone mark
16
transcription factor
6
RNA binding protein
3
control
Date released
125
May, 2021
45
May, 2020
25
May, 2024
20
May, 2022
14
August, 2021
7
August, 2020
3
September, 2020
1
October, 2017
Available data
243
bigWig
207
bed narrowPeak
195
fastq
165
bam
153
zippedFastqFolder
112
tsv
txt
64
xls
44
tagAlign
7
hic
5
bedpe bed3+
4
bed bed3+
3
bed bedgraph
3
cool
2
bed broadPeak
1
bedpe
1
vcf
Organism
240
Homo sapiens
Biosample type
175
primary cell
46
tissue
12
cell line
7
in vitro differentiated cells
Organ
32
liver
25
heart
11
pancreas
10
epithelium
2
connective tissue
Project
140
T1D
90
AMP
10
HPAP
Genome assembly (visualization)
205
hg19
176
GRCh38
Lab
AMP-T2D consortium
170
Kyle Gaulton, UCSD
25
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
12
Bing Ren, UCSD
10
Klaus Kaestner, Upenn
2
Struan F.A. Grant, CHOP
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
files.file_type!
txt
target.investigated_as!
narrow histone mark
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
240 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
primary cell
monocyte
44
53
CD8-positive, alpha-beta T cell
23
4
pancreatic alpha cell
7
pancreatic beta cell
3
B cell
2
+ See 22 more…
tissue
left cardiac atrium
25
liver
20
islet of Langerhans
1
cell line
HepG2
12
in vitro differentiated cells
embryonic stem cell
5
adipocyte
1
osteoblast
1
See all biosamples
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