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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
44
total RNA-seq
18
small RNA-seq
8
WGBS
6
ATAC-seq
4
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
65
DNA binding
65
Transcription
8
DNA accessibility
8
DNA methylation
4
3D chromatin structure
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
5
transcription factor
3
RNA binding protein
3
control
Date released
551
February, 2021
334
November, 2017
303
May, 2021
272
August, 2017
260
May, 2020
210
June, 2019
207
October, 2019
164
July, 2018
97
May, 2019
85
July, 2019
80
November, 2018
72
December, 2017
72
September, 2018
65
April, 2019
49
April, 2018
47
August, 2021
47
October, 2018
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
161
bam
150
bigWig
72
bed narrowPeak
66
bigBed narrowPeak
65
tsv
23
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
150
Homo sapiens
Biosample type
128
tissue
22
primary cell
Organ
68
heart
25
kidney
17
connective tissue
16
brain
12
adipose tissue
10
blood vessel
10
vasculature
8
liver
7
epithelium
5
musculature of body
4
pancreas
3
artery
1
limb
1
pericardium
Project
150
AMP
Genome assembly (visualization)
143
GRCh38
141
hg19
Lab
150
AMP-T2D consortium
files.file_type!
vcf
BIOSAMPLE
ASSAY
150 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
WGBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
29
2
2
2
kidney
18
1
heart right ventricle
11
2
heart
7
2
1
1
omental fat pad
4
1
+ See 21 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 14 more…
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