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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
355
ChIP-seq
104
total RNA-seq
3
ATAC-seq
2
DNase-seq
1
Hi-C
Assay category
355
DNA binding
104
Transcription
5
DNA accessibility
1
3D chromatin structure
Target of assay
300
transcription factor
73
recombinant protein
42
RNA binding protein
37
histone
37
histone modification
23
chromatin remodeller
19
narrow histone mark
18
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
83
February, 2021
November, 2018
27
December, 2018
22
August, 2021
20
January, 2019
20
October, 2019
12
November, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
521
bam
465
bigWig
366
fastq
348
bed narrowPeak
299
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
1
txt
1
vcf
Organism
465
Homo sapiens
Biosample type
1749
tissue
613
primary cell
465
cell line
259
in vitro differentiated cells
3
stem cell
Organ
287
liver
56
artery
56
blood vessel
56
heart
56
pancreas
56
vasculature
50
epithelium
43
blood
43
bodily fluid
12
kidney
8
embryo
Project
461
AMP
4
T1D
Genome assembly (visualization)
463
hg19
397
GRCh38
Lab
451
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
58
inconsistent ontology term
1
inconsistent control
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
1
inconsistent assembly
files.file_type!
xls
month_released!
November, 2018
BIOSAMPLE
ASSAY
465 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
cell line
HepG2
282
5
smooth muscle cell of the coronary artery
4
52
EndoC_BH1
13
33
2
GM12878
42
1
H1-hESC
8
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