Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
615
ChIP-seq
177
DNase-seq
43
ATAC-seq
16
WGBS
4
FAIRE-seq
Assay category
Transcription
615
DNA binding
224
DNA accessibility
16
DNA methylation
Target of assay
522
histone modification
521
histone
268
narrow histone mark
253
broad histone mark
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
June, 2019
152
October, 2019
93
May, 2019
89
August, 2017
65
April, 2019
57
November, 2017
45
October, 2018
40
May, 2024
36
December, 2017
27
May, 2020
23
November, 2018
20
May, 2022
16
July, 2019
14
October, 2017
6
January, 2019
4
March, 2020
3
December, 2018
2
January, 2018
Available data
984
bam
984
bed narrowPeak
855
bigWig
561
bigBed narrowPeak
274
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
85
txt
xls
26
tsv
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
849
Homo sapiens
Biosample type
855
tissue
418
cell line
359
primary cell
132
in vitro differentiated cells
3
stem cell
Organ
193
brain
144
heart
113
liver
102
pancreas
89
kidney
87
limb
66
blood vessel
66
vasculature
53
musculature of body
27
adipose tissue
27
artery
27
connective tissue
27
nerve
18
ureter
16
spleen
3
eye
1
pituitary gland
Project
853
AMP
2
T1D
Genome assembly (visualization)
795
GRCh38
730
hg19
Lab
794
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
xls
assay_slims!
Transcription
BIOSAMPLE
ASSAY
855 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
WGBS
FAIRE-seq
tissue
liver
82
2
20
left cardiac atrium
40
1
body of pancreas
26
4
4
2
heart left ventricle
29
3
2
2
islet of Langerhans
29
1
3
1
+ See 123 more…
See all biosamples
Download