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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
411
ChIP-seq
104
total RNA-seq
3
ATAC-seq
3
Hi-C
2
DNase-seq
1
WGBS
Assay category
411
DNA binding
104
Transcription
5
DNA accessibility
3
3D chromatin structure
1
DNA methylation
Target of assay
356
transcription factor
88
recombinant protein
63
RNA binding protein
37
histone
37
histone modification
30
chromatin remodeller
19
narrow histone mark
18
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
83
February, 2021
57
November, 2018
27
December, 2018
23
August, 2021
20
January, 2019
20
October, 2019
13
November, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
582
bam
522
bigWig
427
fastq
404
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
524
Homo sapiens
Biosample type
1742
tissue
617
primary cell
524
cell line
266
in vitro differentiated cells
3
stem cell
Organ
333
liver
57
pancreas
56
artery
56
blood vessel
56
heart
56
vasculature
55
blood
55
bodily fluid
51
epithelium
12
kidney
8
embryo
Project
520
AMP
4
T1D
Genome assembly (visualization)
519
hg19
454
GRCh38
Lab
509
AMP-T2D consortium
15
Bing Ren, UCSD
Audit category:
59
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
BIOSAMPLE
ASSAY
524 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
DNase-seq
WGBS
cell line
HepG2
326
5
1
1
smooth muscle cell of the coronary artery
4
52
GM12878
54
1
EndoC_BH1
13
33
2
1
H1-hESC
8
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