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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
138
ChIP-seq
127
total RNA-seq
12
ATAC-seq
4
GRO-seq
1
DNase-seq
1
pCHi-C
Assay category
138
DNA binding
127
Transcription
13
DNA accessibility
Target of assay
79
histone
79
histone modification
41
narrow histone mark
37
broad histone mark
37
transcription factor
22
control
6
RNA binding protein
3
chromatin remodeller
Date released
89
May, 2021
54
August, 2017
43
December, 2017
39
February, 2018
22
August, 2021
22
February, 2021
4
January, 2018
4
October, 2019
3
February, 2023
2
March, 2020
1
August, 2018
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
283
Homo sapiens
Biosample type
1830
tissue
787
primary cell
577
cell line
283
in vitro differentiated cells
4
stem cell
Organ
64
connective tissue
29
embryo
23
epithelium
15
liver
2
pancreas
1
adipose tissue
1
heart
Project
283
AMP
Genome assembly (visualization)
259
hg19
248
GRCh38
4
hg18
Lab
273
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
95
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
BIOSAMPLE
ASSAY
283 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
DNase-seq
pCHi-C
in vitro differentiated cells
cardiomyocytes
3
59
adipocyte
53
4
3
1
pancreatic endoderm
18
4
1
neural progenitor cell
13
7
cardiac precursors (cardiac muscle cell)
19
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