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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
501
ChIP-seq
159
total RNA-seq
21
ATAC-seq
5
DNase-seq
3
small RNA-seq
2
Hi-C
2
WGBS
1
RRBS
Assay category
501
DNA binding
162
Transcription
26
DNA accessibility
3
DNA methylation
2
3D chromatin structure
Target of assay
338
transcription factor
83
histone modification
82
histone
82
recombinant protein
77
control
58
RNA binding protein
52
narrow histone mark
30
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
170
May, 2020
63
December, 2017
53
November, 2018
28
August, 2017
20
May, 2022
17
August, 2021
8
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
2
June, 2019
1
December, 2018
1
March, 2020
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
694
Homo sapiens
Biosample type
381
cell line
287
tissue
15
in vitro differentiated cells
11
primary cell
Organ
737
pancreas
694
liver
597
connective tissue
446
adipose tissue
375
epithelium
225
brain
184
heart
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
70
musculature of body
61
blood
61
bodily fluid
58
bone element
37
embryo
31
nerve
24
spleen
18
ureter
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
694
AMP
Genome assembly (visualization)
619
hg19
529
GRCh38
Lab
660
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
694 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
WGBS
RRBS
cell line
HepG2
374
5
1
1
tissue
liver
99
147
20
2
1
1
1
right lobe of liver
10
2
1
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
3
5
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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