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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
208
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
208
DNA binding
35
DNA accessibility
12
Transcription
3
3D chromatin structure
Target of assay
183
histone
183
histone modification
113
narrow histone mark
70
broad histone mark
25
control
3
RNA binding protein
3
transcription factor
Date released
87
November, 2017
83
October, 2019
30
June, 2019
25
May, 2019
16
July, 2019
15
October, 2017
2
November, 2018
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
258
Homo sapiens
Biosample type
238
tissue
20
primary cell
Organ
666
liver
628
pancreas
591
connective tissue
432
adipose tissue
303
epithelium
258
brain
186
heart
157
vasculature
152
blood vessel
131
kidney
91
limb
87
artery
70
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
258
AMP
Genome assembly (visualization)
215
GRCh38
159
hg19
Lab
258
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
258 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
brain
19
14
1
layer of hippocampus
21
caudate nucleus
15
1
substantia nigra
16
temporal lobe
13
1
1
+ See 71 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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