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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ATAC-seq
14
ChIP-seq
Assay category
36
DNA accessibility
14
DNA binding
Target of assay
11
transcription factor
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
20
May, 2022
16
August, 2021
7
August, 2020
3
February, 2023
3
September, 2020
1
October, 2017
Available data
171
fastq
153
zippedFastqFolder
102
bed narrowPeak
64
xls
60
txt
50
bigWig
16
tsv
7
hic
5
bedpe bed3+
3
bed bedgraph
3
cool
2
bed bed3+
2
bed broadPeak
1
bam
1
bedpe
1
vcf
Organism
50
Homo sapiens
Biosample type
21
tissue
14
cell line
10
primary cell
5
in vitro differentiated cells
Organ
34
liver
11
pancreas
10
epithelium
2
connective tissue
Project
40
AMP
10
HPAP
Genome assembly (visualization)
40
hg19
11
GRCh38
Lab
AMP-T2D consortium
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
10
Klaus Kaestner, Upenn
5
Struan F.A. Grant, CHOP
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
50 results
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ATAC-seq
ChIP-seq
tissue
liver
20
islet of Langerhans
1
cell line
HepG2
14
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
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