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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
26
ATAC-seq
Assay category
54
DNA binding
26
DNA accessibility
Target of assay
38
histone
38
histone modification
21
broad histone mark
17
narrow histone mark
16
transcription factor
6
RNA binding protein
Date released
40
May, 2024
20
May, 2022
16
August, 2021
3
February, 2023
1
October, 2017
Available data
142
bed narrowPeak
80
bigWig
64
xls
60
txt
10
tsv
3
bed bedgraph
3
hic
2
bed bed3+
2
bed broadPeak
2
bedpe bed3+
2
fastq
1
bam
1
bedpe
1
vcf
Organism
80
Homo sapiens
Biosample type
61
tissue
14
cell line
primary cell
5
in vitro differentiated cells
Organ
40
heart
34
liver
2
connective tissue
1
pancreas
Project
80
AMP
Genome assembly (visualization)
41
GRCh38
40
hg19
Lab
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
Kyle Gaulton, UCSD
biosample_type!
primary cell
BIOSAMPLE
ASSAY
80 results
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ChIP-seq
ATAC-seq
tissue
left cardiac atrium
40
liver
20
islet of Langerhans
1
cell line
HepG2
14
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
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