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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
ChIP-seq
98
total RNA-seq
5
ATAC-seq
Assay category
131
DNA binding
98
Transcription
5
DNA accessibility
Target of assay
117
histone
117
histone modification
65
broad histone mark
52
narrow histone mark
11
transcription factor
3
control
1
RNA binding protein
Date released
175
May, 2021
45
May, 2020
14
August, 2021
Available data
234
bigWig
204
bam
146
bed narrowPeak
106
tsv
84
tagAlign
24
fastq
6
txt
2
bed bed3+
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
234
Homo sapiens
Biosample type
215
primary cell
14
cell line
5
in vitro differentiated cells
Organ
14
liver
Project
180
T1D
54
AMP
Genome assembly (visualization)
234
hg19
180
GRCh38
Lab
2859
AMP-T2D consortium
220
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
10
Klaus Kaestner, Upenn
5
Struan F.A. Grant, CHOP
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
BIOSAMPLE
ASSAY
234 results
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ChIP-seq
total RNA-seq
ATAC-seq
primary cell
monocyte
84
53
CD8-positive, alpha-beta T cell
33
4
B cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 20 more…
cell line
HepG2
14
in vitro differentiated cells
embryonic stem cell
5
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