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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
total RNA-seq
99
ChIP-seq
12
ATAC-seq
4
GRO-seq
1
DNase-seq
Assay category
112
Transcription
99
DNA binding
13
DNA accessibility
Target of assay
62
histone
62
histone modification
37
transcription factor
32
narrow histone mark
29
broad histone mark
6
RNA binding protein
3
chromatin remodeller
Date released
89
May, 2021
48
August, 2017
34
December, 2017
February, 2018
22
August, 2021
22
February, 2021
4
January, 2018
4
October, 2019
3
February, 2023
2
March, 2020
Available data
252
bam
228
bigWig
116
bed narrowPeak
116
tsv
102
fastq
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
228
Homo sapiens
Biosample type
1772
tissue
613
primary cell
522
cell line
228
in vitro differentiated cells
3
stem cell
Organ
57
connective tissue
20
epithelium
14
liver
11
embryo
2
pancreas
1
heart
Project
228
AMP
Genome assembly (visualization)
223
hg19
212
GRCh38
4
hg18
Lab
218
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
93
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
15
inconsistent control read length
month_released!
February, 2018
BIOSAMPLE
ASSAY
228 results
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total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
47
3
1
neural progenitor cell
7
13
cardiac precursors (cardiac muscle cell)
19
hepatocyte
14
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