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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
400
ChIP-seq
103
total RNA-seq
3
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
400
DNA binding
103
Transcription
5
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
355
transcription factor
88
recombinant protein
62
RNA binding protein
30
chromatin remodeller
27
histone
27
histone modification
15
narrow histone mark
13
control
12
broad histone mark
2
other context
2
other post-translational modification
Date released
268
November, 2017
83
February, 2021
57
November, 2018
27
December, 2018
22
August, 2021
20
January, 2019
20
October, 2019
November, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
567
bam
510
bigWig
427
fastq
392
bed narrowPeak
355
bigBed narrowPeak
118
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
txt
1
vcf
Organism
510
Homo sapiens
Biosample type
1713
tissue
613
primary cell
510
cell line
259
in vitro differentiated cells
3
stem cell
Organ
332
liver
56
artery
56
blood vessel
56
heart
56
vasculature
55
blood
55
bodily fluid
44
pancreas
38
epithelium
12
kidney
8
embryo
Project
506
AMP
4
T1D
Genome assembly (visualization)
505
hg19
442
GRCh38
Lab
496
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
46
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
month_released!
November, 2019
BIOSAMPLE
ASSAY
510 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
326
5
1
smooth muscle cell of the coronary artery
4
52
GM12878
54
1
EndoC_BH1
2
32
2
H1-hESC
8
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