Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
total RNA-seq
21
ChIP-seq
18
small RNA-seq
8
WGBS
6
ATAC-seq
4
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
70
Transcription
21
DNA binding
8
DNA accessibility
8
DNA methylation
4
3D chromatin structure
Target of assay
14
transcription factor
7
histone
7
histone modification
6
RNA binding protein
6
chromatin remodeller
4
broad histone mark
3
control
3
narrow histone mark
Date released
551
February, 2021
334
November, 2017
303
May, 2021
272
August, 2017
260
May, 2020
210
June, 2019
207
October, 2019
164
July, 2018
97
May, 2019
85
July, 2019
80
November, 2018
72
December, 2017
72
September, 2018
65
April, 2019
49
April, 2018
47
August, 2021
47
October, 2018
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
112
bam
111
bigWig
70
tsv
30
fastq
28
bed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
23
bigBed narrowPeak
4
bed bed3+
4
hdf5
Organism
111
Homo sapiens
Biosample type
69
tissue
22
primary cell
20
cell line
Organ
21
heart
17
connective tissue
16
brain
15
blood
15
bodily fluid
13
liver
12
adipose tissue
10
blood vessel
10
vasculature
7
epithelium
7
kidney
6
spleen
5
musculature of body
4
pancreas
3
artery
1
limb
1
pericardium
Project
111
AMP
Genome assembly (visualization)
105
GRCh38
102
hg19
Lab
111
AMP-T2D consortium
BIOSAMPLE
ASSAY
111 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
small RNA-seq
WGBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
2
2
spleen
6
omental fat pad
4
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 22 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 14 more…
cell line
GM12878
15
HepG2
5
See all biosamples
Download