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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
ChIP-seq
191
DNase-seq
89
total RNA-seq
5
ATAC-seq
2
WGBS
1
FAIRE-seq
Assay category
197
DNA accessibility
194
DNA binding
89
Transcription
2
DNA methylation
Target of assay
142
histone modification
141
histone
71
narrow histone mark
69
broad histone mark
51
transcription factor
12
RNA binding protein
3
chromatin remodeller
1
control
Date released
551
February, 2021
334
November, 2017
303
May, 2021
272
August, 2017
260
May, 2020
210
June, 2019
207
October, 2019
164
July, 2018
97
May, 2019
85
July, 2019
80
November, 2018
72
December, 2017
72
September, 2018
65
April, 2019
49
April, 2018
47
August, 2021
47
October, 2018
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
500
bam
482
bigWig
352
bed narrowPeak
287
fastq
252
bigBed narrowPeak
228
bed broadPeak
220
bed bed3+
202
bigBed broadPeak
89
tsv
85
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
Organism
476
Homo sapiens
Biosample type
341
tissue
93
primary cell
48
in vitro differentiated cells
Organ
163
pancreas
80
connective tissue
80
kidney
54
musculature of body
35
epithelium
33
heart
32
limb
30
brain
20
liver
18
adipose tissue
18
ureter
7
vasculature
6
eye
5
blood vessel
2
artery
Project
482
AMP
Genome assembly (visualization)
457
GRCh38
457
hg19
Lab
482
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
482 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
27
1
89
1
heart
18
liver
17
muscle of arm
17
pancreas
12
2
+ See 42 more…
primary cell
skeletal muscle myoblast
15
2
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
skeletal muscle satellite cell
7
+ See 22 more…
in vitro differentiated cells
adipocyte
47
1
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