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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
216
ChIP-seq
91
total RNA-seq
5
ATAC-seq
4
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
216
DNA binding
91
Transcription
10
DNA accessibility
2
DNA methylation
Target of assay
153
histone modification
152
histone
80
broad histone mark
71
narrow histone mark
62
transcription factor
19
RNA binding protein
3
chromatin remodeller
1
control
Date released
551
February, 2021
334
November, 2017
303
May, 2021
272
August, 2017
260
May, 2020
210
June, 2019
207
October, 2019
164
July, 2018
97
May, 2019
85
July, 2019
80
November, 2018
72
December, 2017
72
September, 2018
65
April, 2019
49
April, 2018
47
August, 2021
47
October, 2018
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
358
bam
347
fastq
319
bigWig
187
bed narrowPeak
91
tsv
87
bigBed narrowPeak
85
tagAlign
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
313
Homo sapiens
Biosample type
223
tissue
48
in vitro differentiated cells
48
primary cell
Organ
201
pancreas
70
connective tissue
22
adipose tissue
19
epithelium
18
liver
13
musculature of body
Project
319
AMP
Genome assembly (visualization)
317
hg19
294
GRCh38
Lab
319
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
17
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
319 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
27
89
1
1
body of pancreas
25
liver
17
endocrine pancreas
14
pancreas
13
+ See 7 more…
in vitro differentiated cells
adipocyte
47
1
primary cell
skeletal muscle myoblast
15
2
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
2
1
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