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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
total RNA-seq
32
ChIP-seq
20
ATAC-seq
18
small RNA-seq
8
WGBS
4
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
91
Transcription
32
DNA binding
22
DNA accessibility
8
DNA methylation
4
3D chromatin structure
Target of assay
32
histone
32
histone modification
17
broad histone mark
15
narrow histone mark
3
control
Date released
551
February, 2021
334
November, 2017
303
May, 2021
272
August, 2017
260
May, 2020
210
June, 2019
207
October, 2019
164
July, 2018
97
May, 2019
85
July, 2019
80
November, 2018
72
December, 2017
72
September, 2018
65
April, 2019
49
April, 2018
47
August, 2021
47
October, 2018
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
157
bigWig
154
bam
91
tsv
73
fastq
53
bed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
16
bigBed narrowPeak
4
bed bed3+
4
hdf5
1
csv
Organism
157
Homo sapiens
Biosample type
94
primary cell
63
tissue
Organ
76
pancreas
68
epithelium
21
heart
17
connective tissue
16
brain
12
adipose tissue
10
blood vessel
10
vasculature
8
liver
7
kidney
5
musculature of body
3
artery
1
limb
1
pericardium
Project
157
AMP
Genome assembly (visualization)
151
GRCh38
148
hg19
Lab
157
AMP-T2D consortium
Audit category:
32
missing controlled_by
BIOSAMPLE
ASSAY
157 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
primary cell
pancreatic ductal cell
4
13
4
pancreatic beta cell
10
4
pancreatic acinar cell
2
8
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 19 more…
tissue
heart left ventricle
2
2
2
omental fat pad
4
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
heart
2
1
1
+ See 21 more…
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