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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
186
DNase-seq
29
ChIP-seq
7
ATAC-seq
Assay category
193
DNA accessibility
29
DNA binding
Target of assay
25
histone
25
histone modification
13
broad histone mark
12
narrow histone mark
4
RNA binding protein
4
transcription factor
Date released
334
November, 2017
303
May, 2021
260
May, 2020
255
August, 2017
209
June, 2019
206
October, 2019
165
February, 2021
164
July, 2018
97
May, 2019
79
November, 2018
73
July, 2019
72
December, 2017
72
September, 2018
65
April, 2019
49
April, 2018
47
August, 2021
42
October, 2018
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
20
May, 2022
13
October, 2017
7
August, 2020
7
January, 2018
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
231
bam
222
bigWig
220
bed narrowPeak
215
bigBed narrowPeak
190
bed broadPeak
186
bed bed3+
186
bigBed broadPeak
16
fastq
14
tagAlign
Organism
222
Homo sapiens
Biosample type
175
tissue
47
primary cell
Organ
80
kidney
41
musculature of body
37
brain
33
heart
32
limb
18
epithelium
18
ureter
16
connective tissue
9
pancreas
7
vasculature
6
eye
5
blood vessel
adipose tissue
2
artery
2
liver
1
spleen
Project
222
AMP
Genome assembly (visualization)
222
GRCh38
198
hg19
Lab
221
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
22
inconsistent ontology term
Audit category:
3
missing controlled_by
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
222 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
brain
12
6
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
+ See 35 more…
primary cell
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
mesenchymal stem cell
6
cardiac muscle cell
1
2
epithelial cell of proximal tubule
1
2
+ See 17 more…
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