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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
158
ChIP-seq
13
total RNA-seq
5
ATAC-seq
5
DNase-seq
1
Hi-C
Assay category
158
DNA binding
13
Transcription
10
DNA accessibility
1
3D chromatin structure
Target of assay
151
histone
151
histone modification
109
narrow histone mark
42
broad histone mark
7
recombinant protein
7
transcription factor
Date released
525
February, 2021
328
November, 2017
294
May, 2021
260
May, 2020
255
August, 2017
192
June, 2019
182
October, 2019
131
July, 2018
93
May, 2019
80
November, 2018
78
July, 2019
65
April, 2019
56
December, 2017
45
October, 2018
44
August, 2021
31
February, 2018
30
December, 2018
26
January, 2019
20
May, 2022
19
November, 2019
16
April, 2018
15
March, 2020
14
October, 2017
11
September, 2018
8
January, 2018
5
November, 2020
3
February, 2023
2
June, 2018
Available data
218
bam
182
bigWig
168
bed narrowPeak
56
bigBed narrowPeak
49
tagAlign
13
tsv
6
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bedpe bed3+
3
hic
1
hdf5
1
tagAlign bed3+
Organism
182
Homo sapiens
Biosample type
160
tissue
18
cell line
4
in vitro differentiated cells
Organ
76
brain
52
limb
36
blood vessel
36
vasculature
31
nerve
epithelium
22
kidney
21
artery
15
vein
8
pancreas
7
heart
6
liver
3
connective tissue
1
adipose tissue
1
pituitary gland
Project
182
AMP
Genome assembly (visualization)
182
hg19
179
GRCh38
Lab
182
AMP-T2D consortium
Audit category:
14
inconsistent ontology term
Audit category:
1
inconsistent assembly
organ_slims!
epithelium
BIOSAMPLE
ASSAY
182 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
tissue
tibial nerve
24
4
1
2
tibial artery
18
1
2
heart
5
2
brain
5
1
liver
5
1
+ See 75 more…
cell line
Panc1
6
1
1
RCC 7860 HIF1a re-expression
3
1
RCC 7860 HIF2a over-expression
2
1
RCC 7860 vector
2
1
in vitro differentiated cells
adipocyte
2
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
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