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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ChIP-seq
53
total RNA-seq
9
DNase-seq
1
ATAC-seq
1
FAIRE-seq
Assay category
76
DNA binding
53
Transcription
11
DNA accessibility
Target of assay
67
histone
67
histone modification
43
broad histone mark
24
narrow histone mark
8
transcription factor
4
RNA binding protein
1
control
Date released
56
February, 2021
39
May, 2019
36
October, 2019
July, 2019
5
June, 2019
3
November, 2017
1
March, 2020
Available data
171
bam
140
bigWig
127
bed narrowPeak
79
bigBed narrowPeak
63
tsv
13
bed broadPeak
13
bigBed broadPeak
9
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
1
tar
Organism
140
Homo sapiens
Biosample type
64
tissue
56
cell line
20
primary cell
Organ
619
pancreas
614
liver
553
connective tissue
413
adipose tissue
294
epithelium
206
brain
203
heart
145
vasculature
140
blood vessel
124
kidney
90
limb
82
artery
63
musculature of body
58
bone element
55
blood
55
bodily fluid
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pituitary gland
Project
140
AMP
Genome assembly (visualization)
139
hg19
136
GRCh38
Lab
140
AMP-T2D consortium
organ_slims!
nerve
month_released!
July, 2019
BIOSAMPLE
ASSAY
140 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
tibial artery
18
2
1
ascending aorta
13
1
aorta
11
1
thoracic aorta
12
coronary artery
3
2
cell line
smooth muscle cell of the coronary artery
4
52
primary cell
endothelial cell of umbilical vein
12
2
1
brain microvascular endothelial cell
3
1
kidney capillary endothelial cell
1
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