Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
19
ChIP-seq
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
WGBS
Assay category
398
Transcription
19
DNA binding
2
DNA accessibility
2
DNA methylation
Target of assay
17
transcription factor
5
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
386
February, 2021
16
August, 2017
12
July, 2019
5
October, 2018
1
June, 2019
1
November, 2018
Available data
439
bam
421
bigWig
401
tsv
42
fastq
9
bed narrowPeak
8
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
421
Homo sapiens
Biosample type
419
tissue
2
primary cell
Organ
601
liver
582
pancreas
561
connective tissue
421
adipose tissue
267
epithelium
220
brain
180
heart
152
vasculature
147
blood vessel
131
kidney
89
limb
83
artery
67
musculature of body
58
bone element
54
blood
54
bodily fluid
30
nerve
29
embryo
18
ureter
15
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
421
AMP
Genome assembly (visualization)
420
GRCh38
419
hg19
Lab
421
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
421 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
small RNA-seq
DNase-seq
WGBS
tissue
adipose tissue
381
1
2
white adipose tissue
12
omental fat pad
4
3
1
2
subcutaneous adipose tissue
6
2
1
visceral abdominal adipose tissue
3
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
See all biosamples
Download