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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
18
ChIP-seq
4
ATAC-seq
3
small RNA-seq
2
WGBS
Assay category
398
Transcription
18
DNA binding
4
DNA accessibility
2
DNA methylation
Target of assay
17
transcription factor
5
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Date released
386
February, 2021
16
August, 2017
12
July, 2019
5
October, 2018
1
January, 2018
1
October, 2017
1
October, 2019
Available data
442
bam
425
bigWig
401
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
422
Homo sapiens
Biosample type
420
tissue
2
primary cell
Organ
603
pancreas
560
connective tissue
559
liver
422
adipose tissue
279
epithelium
175
brain
154
heart
138
vasculature
137
blood vessel
81
artery
58
bone element
55
blood
55
bodily fluid
55
limb
53
kidney
29
embryo
29
nerve
22
musculature of body
15
spleen
11
vein
2
eye
1
pericardium
1
pituitary gland
Project
422
AMP
Genome assembly (visualization)
420
GRCh38
420
hg19
Lab
422
AMP-T2D consortium
Audit category:
12
missing controlled_by
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
422 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
WGBS
tissue
adipose tissue
381
1
2
2
white adipose tissue
12
subcutaneous adipose tissue
6
2
1
1
omental fat pad
4
3
1
1
visceral abdominal adipose tissue
3
primary cell
mesenchymal stem cell of adipose
1
1
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