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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
399
total RNA-seq
46
ChIP-seq
35
DNase-seq
5
ATAC-seq
5
small RNA-seq
3
WGBS
Assay category
404
Transcription
46
DNA binding
40
DNA accessibility
3
DNA methylation
Target of assay
29
histone
29
histone modification
17
transcription factor
16
broad histone mark
13
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
42
June, 2019
30
August, 2017
17
July, 2019
6
May, 2019
5
October, 2018
2
January, 2018
2
March, 2020
1
November, 2018
1
October, 2017
1
October, 2019
Available data
499
bam
493
bigWig
410
tsv
73
bed narrowPeak
57
bigBed narrowPeak
49
bed broadPeak
46
fastq
40
bed bed3+
35
bigBed broadPeak
23
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
3
bedpe bed3+
2
hic
1
txt
Organism
493
Homo sapiens
Biosample type
480
tissue
13
primary cell
Organ
623
pancreas
622
liver
570
connective tissue
425
adipose tissue
301
epithelium
222
brain
184
heart
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
493
AMP
Genome assembly (visualization)
490
hg19
475
GRCh38
Lab
493
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
493 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
tissue
adipose tissue
381
1
2
2
muscle of leg
6
13
1
muscle of arm
17
skeletal muscle tissue
1
13
1
1
white adipose tissue
12
+ See 7 more…
primary cell
skeletal muscle satellite cell
1
7
1
mesenchymal stem cell of adipose
1
1
skeletal muscle cell
1
1
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