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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
total RNA-seq
9
DNase-seq
3
ATAC-seq
2
Hi-C
1
FAIRE-seq
1
WGBS
Assay category
DNA binding
58
Transcription
13
DNA accessibility
2
3D chromatin structure
1
DNA methylation
Date released
52
February, 2021
10
July, 2019
6
October, 2019
5
June, 2019
1
March, 2020
Available data
81
bam
74
bigWig
68
tsv
56
bed narrowPeak
11
bed bed3+
10
bigBed narrowPeak
9
bed broadPeak
9
bigBed broadPeak
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
74
Homo sapiens
Biosample type
52
cell line
13
tissue
9
primary cell
Organ
495
connective tissue
462
pancreas
406
adipose tissue
200
epithelium
190
liver
110
heart
92
kidney
76
vasculature
74
blood vessel
60
artery
58
bone element
50
brain
43
limb
41
musculature of body
18
ureter
15
embryo
7
nerve
4
eye
4
spleen
3
vein
1
blood
1
bodily fluid
1
pericardium
Project
74
AMP
Genome assembly (visualization)
72
hg19
71
GRCh38
Lab
74
AMP-T2D consortium
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
74 results
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total RNA-seq
DNase-seq
ATAC-seq
Hi-C
FAIRE-seq
WGBS
cell line
smooth muscle cell of the coronary artery
52
tissue
coronary artery
2
1
thoracic aorta
2
1
tibial artery
2
1
aorta
1
1
ascending aorta
1
1
primary cell
endothelial cell of umbilical vein
2
1
brain microvascular endothelial cell
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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