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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
ChIP-seq
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
172
DNA binding
12
Transcription
3
3D chromatin structure
3
DNA accessibility
Target of assay
166
histone
166
histone modification
106
narrow histone mark
60
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
76
October, 2019
66
November, 2017
25
May, 2019
16
July, 2019
7
October, 2017
Available data
211
bam
190
bigWig
171
bed narrowPeak
118
tagAlign
95
bigBed narrowPeak
26
tsv
19
fastq
15
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
190
Homo sapiens
Biosample type
175
tissue
15
primary cell
Organ
617
liver
615
pancreas
561
connective tissue
423
adipose tissue
284
epithelium
190
brain
154
heart
144
vasculature
141
blood vessel
81
artery
58
bone element
55
blood
55
bodily fluid
55
limb
52
kidney
35
musculature of body
29
embryo
29
nerve
15
spleen
13
vein
2
eye
1
pericardium
1
pituitary gland
Project
190
AMP
Genome assembly (visualization)
182
GRCh38
137
hg19
Lab
190
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
190 results
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ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
brain
11
1
caudate nucleus
12
+ See 65 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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