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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
ChIP-seq
32
DNase-seq
3
Hi-C
2
ATAC-seq
1
FAIRE-seq
Assay category
172
DNA binding
35
DNA accessibility
3
3D chromatin structure
Target of assay
166
histone
166
histone modification
106
narrow histone mark
60
broad histone mark
3
RNA binding protein
3
control
3
transcription factor
Date released
75
October, 2019
66
November, 2017
30
June, 2019
25
May, 2019
7
October, 2017
5
July, 2019
2
November, 2018
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
210
Homo sapiens
Biosample type
193
tissue
17
primary cell
Organ
460
liver
215
pancreas
210
brain
154
epithelium
119
kidney
114
heart
97
vasculature
96
connective tissue
92
blood vessel
87
limb
62
musculature of body
55
blood
55
bodily fluid
31
artery
27
adipose tissue
27
nerve
18
ureter
16
spleen
15
embryo
15
vein
6
eye
1
pituitary gland
Project
210
AMP
Genome assembly (visualization)
202
GRCh38
147
hg19
Lab
210
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
files.file_type!
tsv
BIOSAMPLE
ASSAY
210 results
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ChIP-seq
DNase-seq
Hi-C
ATAC-seq
FAIRE-seq
tissue
brain
11
14
layer of hippocampus
17
angular gyrus
14
caudate nucleus
12
1
temporal lobe
13
+ See 69 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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