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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
ChIP-seq
31
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
2
Hi-C
1
FAIRE-seq
Assay category
169
DNA binding
34
DNA accessibility
12
Transcription
2
3D chromatin structure
Target of assay
165
histone
165
histone modification
105
narrow histone mark
60
broad histone mark
5
control
2
RNA binding protein
2
transcription factor
Date released
76
October, 2019
63
November, 2017
29
June, 2019
25
May, 2019
15
July, 2019
7
October, 2017
2
November, 2018
Available data
239
bam
217
bigWig
200
bed narrowPeak
124
bigBed narrowPeak
118
tagAlign
44
bed broadPeak
35
bigBed broadPeak
33
bed bed3+
26
tsv
18
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
217
Homo sapiens
Biosample type
202
tissue
15
primary cell
Organ
623
pancreas
622
liver
570
connective tissue
425
adipose tissue
301
epithelium
222
brain
184
heart
155
vasculature
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
217
AMP
Genome assembly (visualization)
211
GRCh38
154
hg19
Lab
217
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
217 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
Hi-C
FAIRE-seq
tissue
brain
11
14
1
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
caudate nucleus
12
1
+ See 71 more…
primary cell
astrocyte of the cerebellum
3
1
1
choroid plexus epithelial cell
3
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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