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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
457
total RNA-seq
66
ChIP-seq
8
ATAC-seq
3
DNase-seq
2
WGBS
2
small RNA-seq
Assay category
459
Transcription
66
DNA binding
11
DNA accessibility
2
DNA methylation
Target of assay
39
transcription factor
27
histone
27
histone modification
14
narrow histone mark
12
broad histone mark
9
RNA binding protein
2
chromatin remodeller
Date released
448
February, 2021
65
August, 2017
10
July, 2019
5
October, 2018
3
October, 2019
2
August, 2021
1
January, 2018
1
June, 2019
1
May, 2021
1
November, 2018
1
October, 2017
Available data
557
bam
538
bigWig
463
tsv
98
fastq
58
bed narrowPeak
22
tagAlign
19
bed bed3+
13
bigBed narrowPeak
5
bed bed3
4
bed bedgraph
4
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
538
Homo sapiens
Biosample type
481
tissue
57
in vitro differentiated cells
primary cell
Organ
611
liver
538
connective tissue
431
pancreas
423
adipose tissue
214
heart
202
brain
126
blood vessel
126
vasculature
103
kidney
91
limb
83
artery
70
epithelium
58
bone element
57
musculature of body
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
3
eye
1
pituitary gland
Project
538
AMP
Genome assembly (visualization)
536
hg19
531
GRCh38
Lab
536
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
biosample_type!
primary cell
BIOSAMPLE
ASSAY
538 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
tissue
adipose tissue
381
1
2
2
bone tissue
58
white adipose tissue
12
omental fat pad
4
3
1
2
1
subcutaneous adipose tissue
6
2
1
1
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in vitro differentiated cells
adipocyte
4
47
3
1
cardiac fibroblast
1
osteoblast
1
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