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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
total RNA-seq
12
ChIP-seq
1
GRO-seq
Assay category
14
Transcription
12
DNA binding
Target of assay
9
histone
9
histone modification
5
narrow histone mark
4
broad histone mark
3
transcription factor
Date released
10
February, 2018
8
August, 2021
6
December, 2017
2
May, 2021
1
January, 2018
Available data
32
bam
27
bigWig
23
fastq
14
tsv
12
bed narrowPeak
3
bed bed3+
Organism
27
Homo sapiens
Biosample type
19
in vitro differentiated cells
8
cell line
Organ
623
pancreas
622
liver
570
connective tissue
425
adipose tissue
epithelium
222
brain
184
heart
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
27
AMP
Genome assembly (visualization)
26
GRCh38
26
hg19
1
hg18
Lab
27
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
2
inconsistent control read length
organ_slims!
epithelium
BIOSAMPLE
ASSAY
27 results
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total RNA-seq
ChIP-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
4
12
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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