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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
total RNA-seq
70
single cell RNA-seq
12
ATAC-seq
4
ChIP-seq
2
Hi-C
Assay category
146
Transcription
12
DNA accessibility
4
DNA binding
2
3D chromatin structure
Target of assay
2
broad histone mark
2
control
2
histone
2
histone modification
Date released
33
April, 2018
33
July, 2018
26
February, 2021
26
September, 2018
7
August, 2020
7
July, 2019
6
May, 2021
5
December, 2019
5
October, 2019
4
March, 2020
3
August, 2018
3
September, 2020
2
November, 2017
2
October, 2018
1
June, 2018
1
November, 2019
Available data
317
bam
301
bigWig
257
fastq
156
tsv
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
164
Homo sapiens
Biosample type
126
primary cell
36
cell line
2
in vitro differentiated cells
Organ
498
connective tissue
447
pancreas
414
adipose tissue
183
liver
164
epithelium
76
heart
65
vasculature
64
blood vessel
58
bone element
54
artery
20
brain
15
embryo
12
kidney
8
musculature of body
5
limb
4
nerve
2
spleen
2
vein
1
blood
1
bodily fluid
1
pericardium
Project
152
AMP
10
HPAP
2
T1D
Genome assembly (visualization)
156
GRCh38
154
hg19
Lab
154
AMP-T2D consortium
10
Klaus Kaestner, Upenn
Audit category:
37
inconsistent ontology term
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
164 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
Hi-C
primary cell
pancreatic alpha cell
10
12
7
pancreatic beta cell
10
12
3
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
+ See 15 more…
cell line
EndoC_BH1
33
2
glomerular visceral epithelial cell
1
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
See all biosamples
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