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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
399
total RNA-seq
67
ChIP-seq
6
ATAC-seq
5
DNase-seq
3
WGBS
3
small RNA-seq
Assay category
402
Transcription
67
DNA binding
11
DNA accessibility
3
DNA methylation
Target of assay
50
histone
50
histone modification
34
broad histone mark
17
transcription factor
16
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
53
October, 2019
June, 2019
17
August, 2017
13
July, 2019
6
May, 2019
5
October, 2018
1
January, 2018
1
November, 2018
1
October, 2017
Available data
523
bam
483
bigWig
408
tsv
72
bed narrowPeak
61
bigBed narrowPeak
44
fastq
9
bed bed3+
8
tagAlign
6
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
483
Homo sapiens
Biosample type
481
tissue
2
primary cell
Organ
620
liver
619
pancreas
555
connective tissue
424
adipose tissue
283
epithelium
192
brain
191
heart
148
vasculature
145
blood vessel
83
artery
59
limb
58
bone element
55
blood
55
bodily fluid
51
kidney
31
nerve
29
embryo
27
musculature of body
16
spleen
15
vein
1
pericardium
1
pituitary gland
Project
483
AMP
Genome assembly (visualization)
480
hg19
479
GRCh38
Lab
483
AMP-T2D consortium
Audit category:
12
missing controlled_by
month_released!
June, 2019
BIOSAMPLE
ASSAY
483 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
tissue
adipose tissue
381
1
2
2
tibial nerve
4
24
1
2
tibial artery
18
1
2
white adipose tissue
12
omental fat pad
4
3
1
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
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