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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
399
total RNA-seq
67
ChIP-seq
38
DNase-seq
6
ATAC-seq
3
WGBS
3
small RNA-seq
Assay category
402
Transcription
67
DNA binding
44
DNA accessibility
3
DNA methylation
Target of assay
50
histone
50
histone modification
34
broad histone mark
17
transcription factor
16
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
53
October, 2019
33
June, 2019
17
August, 2017
13
July, 2019
6
May, 2019
5
October, 2018
1
January, 2018
1
November, 2018
1
October, 2017
Available data
556
bam
516
bigWig
408
tsv
105
bed narrowPeak
94
bigBed narrowPeak
44
fastq
42
bed bed3+
39
bed broadPeak
38
bigBed broadPeak
8
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
516
Homo sapiens
Biosample type
514
tissue
2
primary cell
Organ
623
pancreas
622
liver
570
connective tissue
425
adipose tissue
301
epithelium
224
heart
222
brain
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
516
AMP
Genome assembly (visualization)
513
hg19
512
GRCh38
Lab
516
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
516 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
tissue
adipose tissue
381
1
2
2
tibial nerve
4
24
2
1
tibial artery
18
2
1
muscle of leg
6
13
1
muscle of arm
17
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primary cell
mesenchymal stem cell of adipose
1
1
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