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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
total RNA-seq
55
ChIP-seq
38
DNase-seq
3
ATAC-seq
1
WGBS
Assay category
58
Transcription
55
DNA binding
41
DNA accessibility
1
DNA methylation
Target of assay
50
histone
50
histone modification
34
broad histone mark
16
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
56
February, 2021
52
October, 2019
34
June, 2019
9
May, 2019
4
July, 2019
Available data
190
bam
155
bigWig
145
bed narrowPeak
89
bigBed narrowPeak
64
tsv
38
bed bed3+
38
bed broadPeak
38
bigBed broadPeak
6
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
155
Homo sapiens
Biosample type
97
tissue
56
cell line
2
primary cell
Organ
623
pancreas
622
liver
570
connective tissue
425
adipose tissue
301
epithelium
222
brain
184
heart
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
155
AMP
Genome assembly (visualization)
154
GRCh38
154
hg19
Lab
155
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
155 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
tissue
tibial nerve
4
24
2
1
tibial artery
18
2
1
muscle of leg
6
13
1
muscle of arm
17
coronary artery
3
2
1
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cell line
smooth muscle cell of the coronary artery
52
4
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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