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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
total RNA-seq
55
ChIP-seq
38
DNase-seq
3
ATAC-seq
Assay category
58
Transcription
55
DNA binding
41
DNA accessibility
DNA methylation
Target of assay
50
histone
50
histone modification
34
broad histone mark
16
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
56
February, 2021
52
October, 2019
34
June, 2019
9
May, 2019
3
July, 2019
Available data
189
bam
154
bigWig
145
bed narrowPeak
89
bigBed narrowPeak
64
tsv
38
bed bed3+
38
bed broadPeak
38
bigBed broadPeak
6
tagAlign
Organism
154
Homo sapiens
Biosample type
96
tissue
56
cell line
2
primary cell
Organ
621
liver
619
pancreas
568
connective tissue
423
adipose tissue
301
epithelium
222
brain
218
heart
154
vasculature
149
blood vessel
131
kidney
90
limb
85
artery
67
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
15
vein
14
spleen
6
eye
1
pericardium
1
pituitary gland
Project
154
AMP
Genome assembly (visualization)
154
hg19
153
GRCh38
Lab
154
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
154 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
tissue
tibial nerve
4
24
2
1
tibial artery
18
2
1
muscle of leg
6
13
muscle of arm
17
coronary artery
3
2
1
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cell line
smooth muscle cell of the coronary artery
52
4
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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